Query Indels

Querying Indels - include INDELs in the query, check the Include Indels checkbox. The indels are displayed in multiple sequence alignment format along with te SNPs. For insertions, the insertion string is inserted in each variety while the reference sequence is shifted right with gaps (-) equal to the longest insertion. For deletion, the reference alleles are inserted to the reference of length equal to the longest deletion, while gaps (-) are inserted to the varieties. The positions are colored green and blue for insertion and deletion regions, respectively.